Package: klic 1.0.4

Alessandra Cabassi

klic: Kernel Learning Integrative Clustering

Kernel Learning Integrative Clustering (KLIC) is an algorithm that allows to combine multiple kernels, each representing a different measure of the similarity between a set of observations. The contribution of each kernel on the final clustering is weighted according to the amount of information carried by it. As well as providing the functions required to perform the kernel-based clustering, this package also allows the user to simply give the data as input: the kernels are then built using consensus clustering. Different strategies to choose the best number of clusters are also available. For further details please see Cabassi and Kirk (2020) <doi:10.1093/bioinformatics/btaa593>.

Authors:Alessandra Cabassi [aut, cre], Paul DW Kirk [ths], Mehmet Gonen [ctb]

klic_1.0.4.tar.gz
klic_1.0.4.zip(r-4.7)klic_1.0.4.zip(r-4.6)klic_1.0.4.zip(r-4.5)
klic_1.0.4.tgz(r-4.6-any)klic_1.0.4.tgz(r-4.5-any)
klic_1.0.4.tar.gz(r-4.7-any)klic_1.0.4.tar.gz(r-4.6-any)
klic_1.0.4.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
klic/json (API)

# Install 'klic' in R:
install.packages('klic', repos = c('https://acabassi.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/acabassi/klic/issues

On CRAN:

Conda:

cluster-analysisclusteringcocagenomicsintegrative-clusteringkernel-methodsmulti-omics

4.51 score 5 stars 13 scripts 172 downloads 1 mentions 7 exports 88 dependencies

Last updated from:660f4c53dc. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK132
source / vignettesOK179
linux-release-x86_64OK141
macos-release-arm64OK161
macos-oldrel-arm64OK179
windows-develOK82
windows-releaseOK70
windows-oldrelOK83
wasm-releaseOK128

Exports:copheneticCorrelationkkmeanskliclmkkmeanslmkkmeans_missingDataplotSimilarityMatrixspectrumShift

Dependencies:caretclasscliclockclustercocacodetoolscpp11data.tableDEoptimRdiagramdigestdiptestdplyre1071farverflexmixforeachfpcfuturefuture.applygenericsggplot2glmnetglobalsgluegowergtablehardhatipredisobanditeratorskernlabKernSmoothlabelinglatticelavalifecyclelistenvlubridatemagrittrMASSMatrixmclustModelMetricsmodeltoolsnlmennetnumDerivparallellypheatmappillarpkgconfigplyrprabcluspROCprodlimprogressrproxypurrrR6RColorBrewerRcppRcppEigenrecipesreshape2rlangrobustbaserpartS7scalesshapesparclsparsevctrsSQUAREMstringistringrsurvivaltibbletidyrtidyselecttimechangetimeDatetzdbutf8vctrsviridisLitewithr

Introduction to klic

Rendered fromklic-vignette.Rmdusingknitr::rmarkdownon Jun 02 2026.

Last update: 2020-07-08
Started: 2018-10-03